Asynchronous Python and Databases

February 15, 2015 at 12:10 PM | Code

The asynchronous programming topic is difficult to cover. These days, it's not just about one thing, and I'm mostly an outsider to it. However, because I deal a lot with relational databases and the Python stack's interaction with them, I have to field a lot of questions and issues regarding asynchronous IO and database programming, both specific to SQLAlchemy as well as towards Openstack.

As I don't have a simple opinion on the matter, I'll try to give a spoiler for the rest of the blog post here. I think that the Python asyncio library is very neat, promising, and fun to use, and organized well enough that it's clear that some level of SQLAlchemy compatibility is feasible, most likely including most parts of the ORM. As asyncio is now a standard part of Python, this compatiblity layer is something I am interested in producing at some point.

All of that said, I still think that asynchronous programming is just one potential approach to have on the shelf, and is by no means the one we should be using all the time or even most of the time, unless we are writing HTTP or chat servers or other applications that specifically need to concurrently maintain large numbers of arbitrarily slow or idle TCP connections (where by "arbitrarily" we mean, we don't care if individual connections are slow, fast, or idle, throughput can be maintained regardless). For standard business-style, CRUD-oriented database code, the approach given by asyncio is never necessary, will almost certainly hinder performance, and arguments as to its promotion of "correctness" are very questionable in terms of relational database programming. Applications that need to do non-blocking IO on the front end should leave the business-level CRUD code behind the thread pool.

With my assumedly entirely unsurprising viewpoint revealed, let's get underway!

What is Asynchronous IO?

Asynchronous IO is an approach used to achieve concurrency by allowing processing to continue while responses from IO operations are still being waited upon. To achieve this, IO function calls are made to be non blocking, so that they return immediately, before the actual IO operation is complete or has even begun. A typically OS-dependent polling system (such as epoll) is used within a loop in order to query a set of file descriptors in search of the next one which has data available; when located, it is acted upon, and when the operation is complete, control goes back to the polling loop in order to act upon the next descriptor with data available.

Non-blocking IO in its classical use case is for those cases where it's not efficient to dedicate a thread of execution towards waiting for a socket to have results. It's an essential technique for when you need to listen to lots of TCP sockets that are arbitrarily "sleepy" or slow - the best example is a chat server, or some similar kind of messaging system, where you have lots of connections connected persistently, only sending data very occasionally; e.g. when a connection actually sends data, we consider it to be an "event" to be responded to.

In recent years, the asynchronous IO approach has also been successfully applied to HTTP related servers and applications. The theory of operation is that a very large number of HTTP connections can be efficiently serviced without the need for the server to dedicate threads to wait on each connection individually; in particular, slow HTTP clients need not get in the way of the server being able to serve lots of other clients at the same time. Combine this with the renewed popularity of so-called long polling approaches, and non-blocking web servers like nginx have proven to work very well.

Asynchronous IO and Scripting

Asynchronous IO programming in scripting languages is heavily centered on the notion of an event loop, which in its most classic form uses callback functions that receive a call once their corresponding IO request has data available. A critical aspect of this type of programming is that, since the event loop has the effect of providing scheduling for a series of functions waiting for IO, a scripting language in particular can replace the need for threads and OS-level scheduling entirely, at least within a single CPU. It can in fact be a little bit awkward to integrate multithreaded, blocking IO code with code that uses non-blocking IO, as they necessarily use different programming approaches when IO-oriented methods are invoked.

The relationship of asynchronous IO to event loops, combined with its growing popularity for use in web-server oriented applications as well as its ability to provide concurrency in an intuitive and obvious way, found itself hitting a perfect storm of factors for it to become popular on one platform in particular, Javascript. Javascript was designed to be a client side scripting language for browsers. Browsers, like any other GUI app, are essentially event machines; all they do is respond to user-initiated events of button pushes, key presses, and mouse moves. As a result, Javascript has a very strong concept of an event loop with callbacks and, until recently, no concept at all of multithreaded programming.

As an army of front-end developers from the 90's through the 2000's mastered the use of these client-side callbacks, and began to use them not just for user-initiated events but for network-initiated events via AJAX connections, the stage was set for a new player to come along, which would transport the ever growing community of Javascript programmers to a new place...

The Server

Node.js is not the first attempt to make Javascript a server side language. However, a key reason for its success was that there were plenty of sophisticated and experienced Javascript programmers around by the time it was released, and that it also fully embraces the event-driven programming paradigm that client-side Javascript programmers are already well-versed in and comfortable with.

In order to sell this, it followed that the "non-blocking IO" approach needed to be established as appropriate not just for the classic case of "tending to lots of usually asleep or arbitrarily slow connections", but as the de facto style in which all web-oriented software should be written. This meant that any network IO of any kind now had to be interacted with in a non-blocking fashion, and this of course includes database connections - connections which are normally relatively few per process, with numbers of 10-50 being common, are usually pooled so that the latency associated with TCP startup is not much of an issue, and for which the response times for a well-architected database, naturally served over the local network behind the firewall and often clustered, are extremely fast and predictable - in every way, the exact opposite of the use case for which non-blocking IO was first intended. The Postgresql database supports an asynchronous command API in libpq, stating a primary rationale for it as - surprise! using it in GUI applications.

node.js already benefits from an extremely performant JIT-enabled engine, so it's likely that despite this repurposing of non-blocking IO for a case in which it was not intended, scheduling among database connections using non-blocking IO works acceptably well. (authors note: the comment here regarding libuv's thread pool is removed, as this only regards file IO.)

The Spectre of Threads

Well before node.js was turning masses of client-side Javascript developers into async-only server side programmers, the multithreaded programming model had begun to make academic theorists complain that they produce non-deterministic programs, and asynchronous programming, having the side effect that the event-driven paradigm effectively provides an alternative model of programming concurrency (at least for any program with a sufficient proportion of IO to keep context switches high enough), quickly became one of several hammers used to beat multithreaded programming over the head, centered on the two critiques that threads are expensive to create and maintain in an application, being inappropriate for applications that wish to tend to hundreds or thousands of connections simultaneously, and secondly that multithreaded programming is difficult and non-deterministic. In the Python world, continued confusion over what the GIL does and does not do provided for a natural tilling of land fertile for the async model to take root more strongly than might have occurred in other scenarios.

How do you like your Spaghetti?

The callback style of node.js and other asynchronous paradigms was considered to be problematic; callbacks organized for larger scale logic and operations made for verbose and hard-to-follow code, commonly referred to as callback spaghetti. Whether callbacks were in fact spaghetti or a thing of beauty was one of the great arguments of the 2000's, however I fortunately don't have to get into it because the async community has clearly acknowledged the former and taken many great steps to improve upon the situation.

In the Python world, one approach offered in order to allow for asyncrhonous IO while removing the need for callbacks is the "implicit async IO" approach offered by eventlet and gevent. These take the approach of instrumenting IO functions to be implicitly non-blocking, organized such that a system of green threads may each run concurrently, using a native event library such as libev to schedule work between green threads based on the points at which non-blocking IO is invoked. The effect of implicit async IO systems is that the vast majority of code which performs IO operations need not be changed at all; in most cases, the same code can literally be used in both blocking and non-blocking IO contexts without any changes (though in typical real-world use cases, certainly not without occasional quirks).

In constrast to implicit async IO is the very promising approach offered by Python itself in the form of the previously mentioned asyncio library, now available in Python 3. Asyncio brings to Python fully standardized concepts of "futures" and coroutines, where we can produce non-blocking IO code that flows in a very similar way to traditional blocking code, while still maintaining the explicit nature of when non blocking operations occur.

SQLAlchemy? Asyncio? Yes?

Now that asyncio is part of Python, it's a common integration point for all things async. Because it maintains the concepts of meaningful return values and exception catching semantics, getting an asyncio version of SQLAlchemy to work for real is probably feasible; it will still require at least several external modules that re-implement key methods of SQLAlchemy Core and ORM in terms of async results, but it seems that the majority of code, even within execution-centric parts, can stay much the same. It no longer means a rewrite of all of SQLAlchemy, and the async aspects should be able to remain entirely outside of the central library itself. I've started playing with this. It will be a lot of effort but should be doable, even for the ORM where some of the patterns like "lazy loading" will just have to work in some more verbose way.

However. I don't know that you really would generally want to use an async-enabled form of SQLAlchemy.

Taking Async Web Scale

As anticipated, let's get into where it's all going wrong, especially for database-related code.

Issue One - Async as Magic Performance Fairy Dust

Many (but certainly not all) within both the node.js community as well as the Python community continue to claim that asynchronous programming styles are innately superior for concurrent performance in nearly all cases. In particular, there's the notion that the context switching approaches of explicit async systems such as that of asyncio can be had virtually for free, and as the Python has a GIL, that all adds up in some unspecified/non-illustrated/apples-to-oranges way to establish that asyncio will totally, definitely be faster than using any kind of threaded approach, or at the very least, not any slower. Therefore any web application should as quickly as possible be converted to use a front-to-back async approach for everything, from HTTP request to database calls, and performance enhancements will come for free.

I will address this only in terms of database access. For HTTP / "chat" server styles of communication, either listening as a server or making client calls, asyncio may very well be superior as it can allow lots more sleepy/arbitrarily slow connections to be tended towards in a simple way. But for local database access, this is just not the case.

1. Python is Very , Very Slow compared to your database

Update - redditor Riddlerforce found valid issues with this section, in that I was not testing over a network connection. Results here are updated. The conclusion is the same, but not as hyperbolically amusing as it was before.

Let's first review asynchronous programming's sweet spot, the I/O Bound application:

I/O Bound refers to a condition in which the time it takes to complete a computation is determined principally by the period spent waiting for input/output operations to be completed. This circumstance arises when the rate at which data is requested is slower than the rate it is consumed or, in other words, more time is spent requesting data than processing it.

A great misconception I seem to encounter often is the notion that communication with the database takes up a majority of the time spent in a database-centric Python application. This perhaps is a common wisdom in compiled languages such as C or maybe even Java, but generally not in Python. Python is very slow, compared to such systems; and while Pypy is certainly a big help, the speed of Python is not nearly as fast as your database, when dealing in terms of standard CRUD-style applications (meaning: not running large OLAP-style queries, and of course assuming relatively low network latencies). As I worked up in my PyMySQL Evaluation for Openstack, whether a database driver (DBAPI) is written in pure Python or in C will incur significant additional Python-level overhead. For just the DBAPI alone, this can be as much as an order of magnitude slower. While network overhead will cause more balanced proportions between CPU and IO, just the CPU time spent by Python driver itself still takes up twice the time as the network IO, and that is without any additional database abstraction libraries, business logic, or presentation logic in place.

This script, adapted from the Openstack entry, illustrates a pretty straightforward set of INSERT and SELECT statements, and virtually no Python code other than the barebones explicit calls into the DBAPI.

MySQL-Python, a pure C DBAPI, runs it like the following over a network:

DBAPI (cProfile):  <module 'MySQLdb'>
     47503 function calls in 14.863 seconds
DBAPI (straight time):  <module 'MySQLdb'>, total seconds 12.962214

With PyMySQL, a pure-Python DBAPI,and a network connection we're about 30% slower:

DBAPI (cProfile):  <module 'pymysql'>
     23807673 function calls in 21.269 seconds
DBAPI (straight time):  <module 'pymysql'>, total seconds 17.699732

Running against a local database, PyMySQL is an order of magnitude slower than MySQLdb:

DBAPI:  <module 'pymysql'>, total seconds 9.121727

DBAPI:  <module 'MySQLdb'>, total seconds 1.025674

To highlight the actual proportion of these runs that's spent in IO, the following two RunSnakeRun displays illustrate how much time is actually for IO within the PyMySQL run, both for local database as well as over a network connection. The proportion is not as dramatic over a network connection, but in that case network calls still only take 1/3rd of the total time; the other 2/3rds is spent in Python crunching the results. Keep in mind this is just the DBAPI alone; a real world application would have database abstraction layers, business and presentation logic surrounding these calls as well:

PyMySQL profile result

Local connection - clearly not IO bound.

PyMySQL profile result, over the network

Network connection - not as dramatic, but still not IO bound (8.7 sec of socket time vs. 24 sec for the overall execute)

Let's be clear here, that when using Python, calls to your database, unless you're trying to make lots of complex analytical calls with enormous result sets that you would normally not be doing in a high performing application, or unless you have a very slow network, do not typically produce an IO bound effect. When we talk to databases, we are almost always using some form of connection pooling, so the overhead of connecting is already mitigated to a large extent; the database itself can select and insert small numbers of rows very fast on a reasonable network. The overhead of Python itself, just to marshal messages over the wire and produce result sets, gives the CPU plenty of work to do which removes any unique throughput advantages to be had with non-blocking IO. With real-world activities based around database operations, the proportion spent in CPU only increases.

2. AsyncIO uses appealing, but relatively inefficient Python paradigms

At the core of asyncio is that we are using the @asyncio.coroutine decorator, which does some generator tricks in order to have your otherwise synchronous looking function defer to other coroutines. Central to this is the yield from technique, which causes the function to stop its execution at that point, while other things go on until the event loop comes back to that point. This is a great idea, and it can also be done using the more common yield statement as well. However, using yield from, we are able to maintain at least the appearance of the presence of return values:

def some_coroutine():
    conn = yield from db.connect()
    return conn

That syntax is fantastic, I like it a lot, but unfortunately, the mechanism of that return conn statement is necessarily that it raises a StopIteration exception. This, combined with the fact that each yield from call more or less adds up to the overhead of an individual function call separately. I tweeted a simple demonstration of this, which I include here in abbreviated form:

def return_with_normal():
    """One function calls another normal function, which returns a value."""

    def foo():
        return 5

    def bar():
        f1 = foo()
        return f1

    return bar

def return_with_generator():
    """One function calls another coroutine-like function,
    which returns a value."""

    def decorate_to_return(fn):
        def decorate():
            it = fn()
                x = next(it)
            except StopIteration as y:
                return y.args[0]
        return decorate

    def foo():
        yield from range(0)
        return 5

    def bar():
        f1 = foo()
        return f1

    return bar

return_with_normal = return_with_normal()
return_with_generator = return_with_generator()

import timeit

    "from __main__ import return_with_generator", number=10000000))
    "from __main__ import return_with_normal", number=10000000))

The results we get are that the do-nothing yield from + StopIteration take about six times longer:

yield from: 12.52761328802444
normal: 2.110536064952612

To which many people said to me, "so what? Your database call is much more of the time spent". Never minding that we're not talking here about an approach to optimize existing code, but to prevent making perfectly fine code more slow than it already is. The PyMySQL example should illustrate that Python overhead adds up very fast, even just within a pure Python driver, and in the overall profile dwarfs the time spent within the database itself. However, this argument still may not be convincing enough.

So, I will here present a comprehensive test suite which illustrates traditional threads in Python against asyncio, as well as gevent style nonblocking IO. We will use psycopg2 which is currently the only production DBAPI that even supports async, in conjunction with aiopg which adapts psycopg2's async support to asyncio and psycogreen which adapts it to gevent.

The purpose of the test suite is to load a few million rows into a Postgresql database as fast as possible, while using the same general set of SQL instructions, such that we can see if in fact the GIL slows us down so much that asyncio blows right past us with ease. The suite can use any number of connections simultaneously; at the highest I boosted it up to using 350 concurrent connections, which trust me, will not make your DBA happy at all.

The results of several runs on different machines under different conditions are summarized at the bottom of the README. The best performance I could get was running the Python code on one laptop interfacing to the Postgresql database on another, but in virtually every test I ran, whether I ran just 15 threads/coroutines on my Mac, or 350 (!) threads/coroutines on my Linux laptop, threaded code got the job done much faster than asyncio in every case (including the 350 threads case, to my surprise), and usually faster than gevent as well. Below are the results from running 120 threads/processes/connections on the Linux laptop networked to the Postgresql database on a Mac laptop:

Python2.7.8 threads (22k r/sec, 22k r/sec)
Python3.4.1 threads (10k r/sec, 21k r/sec)
Python2.7.8 gevent (18k r/sec, 19k r/sec)
Python3.4.1 asyncio (8k r/sec, 10k r/sec)

Above, we see asyncio significantly slower for the first part of the run (Python 3.4 seemed to have some issue here in both threaded and asyncio), and for the second part, fully twice as slow compared to both Python2.7 and Python3.4 interpreters using threads. Even running 350 concurrent connections, which is way more than you'd usually ever want a single process to run, asyncio could hardly approach the efficiency of threads. Even with the very fast and pure C-code psycopg2 driver, just the overhead of the aiopg library on top combined with the need for in-Python receipt of polling results with psycopg2's asynchronous library added more than enough Python overhead to slow the script right down.

Remember, I wasn't even trying to prove that asyncio is significantly slower than threads; only that it wasn't any faster. The results I got were more dramatic than I expected. We see also that an extremely low-latency async approach, e.g. that of gevent, is also slower than threads, but not by much, which confirms first that async IO is definitely not faster in this scenario, but also because asyncio is so much slower than gevent, that it is in fact the in-Python overhead of asyncio's coroutines and other Python constructs that are likely adding up to very significant additional latency on top of the latency of less efficient IO-based context switching.

Issue Two - Async as Making Coding Easier

This is the flip side to the "magic fairy dust" coin. This argument expands upon the "threads are bad" rhetoric, and in its most extreme form goes that if a program at some level happens to spawn a thread, such as if you wrote a WSGI application and happen to run it under mod_wsgi using a threadpool, you are now doing "threaded programming", of the caliber that is just as difficult as if you were doing POSIX threading exercises throughout your code. Despite the fact that a WSGI application should not have the slightest mention of anything to do with in-process shared and mutable state within in it, nope, you're doing threaded programming, threads are hard, and you should stop.

The "threads are bad" argument has an interesting twist (ha!), which is that it is being used by explicit async advocates to argue against implicit async techniques. Glyph's Unyielding post makes exactly this point very well. The premise goes that if you've accepted that threaded concurrency is a bad thing, then using the implicit style of async IO is just as bad, because at the end of the day, the code looks the same as threaded code, and because IO can happen anywhere, it's just as non-deterministic as using traditional threads. I would happen to agree with this, that yes, the problems of concurrency in a gevent-like system are just as bad, if not worse, than a threaded system. One reason is that concurrency problems in threaded Python are fairly "soft" because already the GIL, as much as we hate it, makes all kinds of normally disastrous operations, like appending to a list, safe. But with green threads, you can easily have hundreds of them without breaking a sweat and you can sometimes stumble across pretty weird issues that are normally not possible to encounter with traditional, GIL-protected threads.

As an aside, it should be noted that Glyph takes a direct swipe at the "magic fairy dust" crowd:

Unfortunately, “asynchronous” systems have often been evangelized by emphasizing a somewhat dubious optimization which allows for a higher level of I/O-bound concurrency than with preemptive threads, rather than the problems with threading as a programming model that I’ve explained above. By characterizing “asynchronousness” in this way, it makes sense to lump all 4 choices together.

I’ve been guilty of this myself, especially in years past: saying that a system using Twisted is more efficient than one using an alternative approach using threads. In many cases that’s been true, but:

  1. the situation is almost always more complicated than that, when it comes to performance,
  2. “context switching” is rarely a bottleneck in real-world programs, and
  3. it’s a bit of a distraction from the much bigger advantage of event-driven programming, which is simply that it’s easier to write programs at scale, in both senses (that is, programs containing lots of code as well as programs which have many concurrent users).

People will quote Glyph's post when they want to talk about how you'll have fewer bugs in your program when you switch to asyncio, but continue to promise greater performance as well, for some reason choosing to ignore this part of this very well written post.

Glyph makes a great, and very clear, argument for the twin points that both non-blocking IO should be used, and that it should be explicit. But the reasoning has nothing to do with non-blocking IO's original beginnings as a reasonable way to process data from a large number of sleepy and slow connections. It instead has to do with the nature of the event loop and how an entirely new concurrency model, removing the need to expose OS-level context switching, is emergent.

While we've come a long way from writing callbacks and can now again write code that looks very linear with approaches like asyncio, the approach should still require that the programmer explicitly specify all those function calls where IO is known to occur. It begins with the following example:

def transfer(amount, payer, payee, server):
    if not payer.sufficient_funds_for_withdrawal(amount):
        raise InsufficientFunds()
    log("{payer} has sufficient funds.", payer=payer)
    log("{payee} received payment", payee=payee)
    log("{payer} made payment", payer=payer)
    server.update_balances([payer, payee])

The concurrency mistake here in a threaded perspective is that if two threads both run transfer() they both may withdraw from payer such that payer goes below InsufficientFunds, without this condition being raised.

The explcit async version is then:

def transfer(amount, payer, payee, server):
    if not payer.sufficient_funds_for_withdrawal(amount):
        raise InsufficientFunds()
    log("{payer} has sufficient funds.", payer=payer)
    log("{payee} received payment", payee=payee)
    log("{payer} made payment", payer=payer)
    yield from server.update_balances([payer, payee])

Where now, within the scope of the process we're in, we know that we are only allowing anything else to happen at the bottom, when we call yield from server.update_balances(). There is no chance that any other concurrent calls to payer.withdraw() can occur while we're in the function's body and have not yet reached the server.update_balances() call.

He then makes a clear point as to why even the implicit gevent-style async isn't sufficient. Because with the above program, the fact that payee.deposit() and payer.withdraw() do not do a yield from, we are assured that no IO might occur in future versions of these calls which would break into our scheduling and potentially run another transfer() before ours is complete.

(As an aside, I'm not actually sure, in the realm of "we had to type yield from and that's how we stay aware of what's going on", why the yield from needs to be a real, structural part of the program and not just, for example, a magic comment consumed by a gevent/eventlet-integrated linter that tests callstacks for IO and verifies that the corresponding source code has been annotated with special comments, as that would have the identical effect without impacting any libraries outside of that system and without incurring all the Python performance overhead of explicit async. But that's a different topic.)

Regardless of style of explicit coroutine, there's two flaws with this approach.

One is that asyncio makes it so easy to type out yield from that the idea that it prevents us from making mistakes loses a lot of its plausibility. A commenter on Hacker News made this great point about the notion of asynchronous code being easier to debug:

It's basically, "I want context switches syntactically explicit in my code. If they aren't, reasoning about it is exponentially harder."

And I think that's pretty clearly a strawman. Everything the author claims about threaded code is true of any re-entrant code, multi-threaded or not. If your function inadvertently calls a function which calls the original function recursively, you have the exact same problem.

But, guess what, that just doesn't happen that often. Most code isn't re-entrant. Most state isn't shared.

For code that is concurrent and does interact in interesting ways, you are going to have to reason about it carefully. Smearing "yield from" all over your code doesn't solve.

In practice, you'll end up with so many "yield from" lines in your code that you're right back to "well, I guess I could context switch just about anywhere", which is the problem you were trying to avoid in the first place.

In my benchmark code, one can see this last point is exactly true. Here's a bit of the threaded version:

    "select id from geo_record where fileid=%s and logrecno=%s",
    (item['fileid'], item['logrecno'])
row = cursor.fetchone()
geo_record_id = row[0]

    "select, d.index from dictionary_item as d "
    "join matrix as m on where m.segment_id=%s "
    "order by m.sortkey, d.index",
dictionary_ids = [
    row[0] for row in cursor
assert len(dictionary_ids) == len(item['items'])

for dictionary_id, element in zip(dictionary_ids, item['items']):
        "insert into data_element "
        "(geo_record_id, dictionary_item_id, value) "
        "values (%s, %s, %s)",
        (geo_record_id, dictionary_id, element)

Here's a bit of the asyncio version:

yield from cursor.execute(
    "select id from geo_record where fileid=%s and logrecno=%s",
    (item['fileid'], item['logrecno'])
row = yield from cursor.fetchone()
geo_record_id = row[0]

yield from cursor.execute(
    "select, d.index from dictionary_item as d "
    "join matrix as m on where m.segment_id=%s "
    "order by m.sortkey, d.index",
rows = yield from cursor.fetchall()
dictionary_ids = [row[0] for row in rows]

assert len(dictionary_ids) == len(item['items'])

for dictionary_id, element in zip(dictionary_ids, item['items']):
    yield from cursor.execute(
        "insert into data_element "
        "(geo_record_id, dictionary_item_id, value) "
        "values (%s, %s, %s)",
        (geo_record_id, dictionary_id, element)

Notice how they look exactly the same? The fact that yield from is present is not in any way changing the code that I write, or the decisions that I make - this is because in boring database code, we basically need to do the queries that we need to do, in order. I'm not going to try to weave an intelligent, thoughtful system of in-process concurrency into how I call into the database or not, or try to repurpose when I happen to need database data as a means of also locking out other parts of my program; if I need data I'm going to call for it.

Whether or not that's compelling, it doesn't actually matter - using async or mutexes or whatever inside our program to control concurrency is in fact completely insufficient in any case. Instead, there is of course something we absolutely must always do in real world boring database code in the name of concurrency, and that is:

Database Code Handles Concurrency through ACID, Not In-Process Synchronization

Whether or not we've managed to use threaded code or coroutines with implicit or explicit IO and find all the race conditions that would occur in our process, that matters not at all if the thing we're talking to is a relational database, especially in today's world where everything runs in clustered / horizontal / distributed ways - the handwringing of academic theorists regarding the non-deterministic nature of threads is just the tip of the iceberg; we need to deal with entirely distinct processes, and regardless of what's said, non-determinism is here to stay.

For database code, you have exactly one technique to use in order to assure correct concurrency, and that is by using ACID-oriented constructs and techniques. These unfortunately don't come magically or via any known silver bullet, though there are great tools that are designed to help steer you in the right direction.

All of the example transfer() functions above are incorrect from a database perspective. Here is the correct one:

def transfer(amount, payer, payee, server):
    with transaction.begin():
        if not payer.sufficient_funds_for_withdrawal(amount, lock=True):
            raise InsufficientFunds()
        log("{payer} has sufficient funds.", payer=payer)
        log("{payee} received payment", payee=payee)
        log("{payer} made payment", payer=payer)
        server.update_balances([payer, payee])

See the difference? Above, we use a transaction. To call upon the SELECT of the payer funds and then modify them using autocommit would be totally wrong. We then must ensure that we retrieve this value using some appropriate system of locking, so that from the time that we read it, to the time that we write it, it is not possible to change the value based on a stale assumption. We'd probably use a SELECT .. FOR UPDATE to lock the row we intend to update. Or, we might use "read committed" isolation in conjunction with a version counter for an optimistic approach, so that our function fails if a race condition occurs. But in no way does the fact that we're using threads, greenlets, or whatever concurrency mechanism in our single process have any impact on what strategy we use here; our concurrency concerns involve the interaction of entirely separate processes.

Sum up!

Please note I am not trying to make the point that you shouldn't use asyncio. I think it's really well done, it's fun to use, and I still am interested in having more of a SQLAlchemy story for it, because I'm sure folks will still want this no matter what anyone says.

My point is that when it comes to stereotypical database logic, there are no advantages to using it versus a traditional threaded approach, and you can likely expect a small to moderate decrease in performance, not an increase. This is well known to many of my colleagues, but recently I've had to argue this point nonetheless.

An ideal integration situation if one wants to have the advantages of non-blocking IO for receiving web requests without needing to turn their business logic into explicit async is a simple combination of nginx with uWsgi, for example.

Introduction to SQLAlchemy - Pycon 2013 - Wrapup

April 04, 2013 at 12:10 PM | Code, Talks, SQLAlchemy

Introduction to SQLAlchemy - Pycon 2013

March 05, 2013 at 12:10 PM | Code, Talks, SQLAlchemy

Preparations are just about complete for my upcoming tutorial Introduction to SQLAlchemy. There's a good crowd of people already attending, and I think registration is still open in case more people want to sign up.

But in any case, if you are coming, this year there is prerequisite material, including the software installs as well as a "Relational Overview" section that covers the basics of SQL and relational databases. Everyone coming to the tutorial should read through this document, so that we're all on roughly the same page regarding upfront SQL knowledge, and try to get the software installed. If there's any issues with the software, please report bugs to me and we'll try to get them resolved by tutorial time. We will also be available at the Wednesday 6:30pm tutorial setup session to help with installs.

Historically, tutorials pack the whole three hours of material up pretty solidly, and I hope I can balance getting lots of coverage versus not talking too fast. Thanks for signing up !

Pycon Canada - the SQLAlchemy Session In Depth

November 14, 2012 at 08:31 AM | Code, Talks, SQLAlchemy

Video is up for my talk, The SQLAlchemy Session - In Depth. In this talk, I delve into the key philosophies behind the design of SQLAlchemy's Session system. Starting with a brief review of the ACID model, I contrast the approach of the so-called "active record" pattern to that of the more explicit Session pattern, and how the two approaches integrate with the ACID model at work within a relational database. Afterwards, I present an HTML animation of a Session object at work.

Supporting a (Very Interesting) New Database

October 25, 2012 at 08:12 PM | Code, SQLAlchemy

Updated 1/23/2014 - Akiban is now rolled into FoundationDB, where it serves as the "FoundationDB SQL Layer". Work has continued on the DBAPI and SQLAlchemy libraries; see the updated links at the bottom.

As SQLAlchemy 0.8 nears its first beta release, possibly within the week, lots of new features and additions became apparent as the development cycle went on. One area that saw more activity than usual was in the area of new dialects. Going forward, SQLAlchemy will be much more capable of supporting externally-installed dialects, thanks to a new testing suite. The motiviation for this new suite started when I was tasked with supporting a new and very interesting database vendor.

A Late Add

I was approached some months ago by a vendor known as Akiban, with a request that was totally new to me. On the initial emails, the idea seemed to be some kind of database that can produce JSON documents from tables, which by itself didn't seem at all very novel; there are already products like HTSQL and SlashDB (friend of SQLAlchemy!) which provide RESTful services around relational databases.

But digging in, it became apparent that this company was taking a much more elaborate path to that goal - this company is producing their own relational database from scratch. The server itself, Akiban server, is written in Java and is designed to act in large part like Postgresql, with some MySQL compatibility added in as well. Within the span of this obviously monumental task, they have built what seems to be exactly one twist, but it is a really interesting twist, which they call a "table grouping".

I was very flattered that Akiban not only wanted me to provide SQLAlchemy support for their database, but to help them come up with their Python DBAPI story overall. And, they wanted not just a SQLAlchemy dialect and Python DBAPI story, they also wanted my thoughts on how modern ORMs can integrate with the unique features of this system.

The reason all three of these areas are up for grabs with Akiban, is that while it acts pretty much like a regular relational database most of the time, it does something strange when the "table grouping" idea is in use. At the DDL level, a "table grouping" is established just like a foreign key:

CREATE TABLE customer (
    name VARCHAR(30) NOT NULL

CREATE TABLE cust_order (
    customer_id INTEGER,
    ordernum VARCHAR(30) NOT NULL,
    timestamp DATETIME,
    GROUPING FOREIGN KEY (customer_id) REFERENCES customer

This single keyword on GROUPING causes Akiban to organize the data in a way I don't think any other database does, which is that it stores the rows for cust_order interleaved within those of customer. Meaning, it stores the data hierarchically, on disk. This special hierarchy is then made available through SQL. This is the second part that is really surprising, which is in order to support this, there were no changes at all needed to the SQL syntax. The only change made to SQL was a semantic one.

Normally, SQL allows us to query for a correlated SELECT in the columns or WHERE clause of a SELECT statement:

SELECT name, (
                SELECT ordernum
                FROM cust_order
                AND ordernum like 'order1%'
        ) AS ordernum
FROM customer

The correlated SELECT must return exactly one column, and one row, or your database will complain. Here, Akiban merely took away the "complain" part, and when specifying a correlated subquery with multiple columns and potentially multiple rows, you instead get back a result that is hierarchical, assuming the tables you're embedding are related to the parent via a "grouping" - the "nested" rows are fetched in groups along with each corresponding parent row, and delivered inline. We would get such a result from Akiban given a statement like that below:

SELECT name, (
                SELECT ordernum, timestamp
                FROM cust_order
        ) AS orders
FROM customer

But what does a "hierarchical" result look like? Well, for Akiban, since they wanted this to all work over the Postgresql protocol, for now they actually send you back a JSON string per parent row, as one column. Such as this:

{"name":"Some Customer", "orders":[{"ordernum":"some order", "timestamp":"20121005121700"}, {"ordernum":"some other order", "timestamp":"20121012184507"}]}

With that, Akiban asked me what I can do with this. Particularly, how can an ORM like SQLAlchemy take advantage of it?

well it's just nested

The first thing I wanted to do with this data was to make that JSON look like a regular SQL result again. Having worked with "eager loading" for so many years, I already tend to see SQL products as "hierarchies" - a regular JOIN of customer and order would have rows like:        ordernum            timestamp
-------------        ----------------    --------------
Some Customer        some order          20121005121700
Some Customer        some other order    20121012184507
Some Other Customer  ...                 ...

The result set from a correlated subquery on a "grouped" foreign key, in my mind, looks pretty similar:        orders
-------------        ----------------------------------
Some Customer        ordernum            timestamp
                     ----------------    --------------
                     some order          20121005121700
                     some other order    20121012184507
Some Other Customer  ...                 ...

When we normally have a subquery in the "columns" clause of a SELECT, the result of that SELECT comes back as a single result set column. My idea was that just as they don't have to change the syntax of SQL to express a "grouping" here, we didn't have to change the idea on the result side either - we just have a nested cursor, where a single result set column orders returns a new cursor as its value.

I initially studied Postgresql's protocol quite a bit, mostly by reading the source to the pure-Python pg8000 DBAPI for Postgresql, and proposed to Akiban that they just add some extra messages to the Postgresql protocol to support this concept without the need for JSON being involved. I could extend or fork pg8000 into a new Akiban-specific DBAPI. But for the time being, what I ended up doing was to stick with the DBAPI that already works with Akiban, psycopg2, and extend it on the outside of the JSON to coerce the result back into a cursor shape. With psycopg2's very extensible design, I was able to make use of its Connection extension system to intercept JSON-formatted results back into cursor-like results, as well as to reuse its existing typing system in order to apply the same string interception it uses on raw Postgresql messages to the JSON-encoded fields as well. The result of this stage of the game is Akiban for Python, an extension to psycopg2 that introduces a new result-row datatype, the nested cursor, which is transparently returned when you emit an Akiban "nested" SQL statement - the presense of JSON is entirely concealed.

turtles all the way down (or up, in this case)

With a DBAPI providing nested cursors, the next task was an Akiban dialect for SQLAlchemy which can wrap these nested cursors into SQLAlchemy's cursor-wrapping ResultProxy object. Over the years, I've had to make ResultProxy objects deal with so many curveballs, from cx_Oracle's streaming LOB objects and OUT parameters, to the buffering required with psycopg2's "server side cursors", to pysqlite's quirk with column name descriptions being prepended with the table name when the SQL statement is a UNION of two SELECT statements, that this task was relatively easy to get going. Slightly more tricky was to get the statement compiler to keep track of "nested" select() constructs and to relate them to the nested cursors ultimately produced. The end result is that we can build an Akiban nested query and get its results:

from sqlalchemy_akiban import nested

stmt = nested([order.c.ordernum, order.c.timestamp]).\
            where(order.c.customer_id ==
stmt = select([, stmt.label('orders')])

for customer_row in connection.execute(stmt):
    print "customer name:", customer_row['name']
    for order_row in customer_row['orders']:
        print "ordernum:", order_row['ordernum']
        print "timestamp:", order_row['timestamp']

And with the above, all of the usual SQLAlchemy Core capabilities like result-set typing and column targeting work out the same. At the ORM level, I added similar nesting features into Query (meaning, you can get back nested tuples) and also produced a new "loader strategy" specific for "Akiban" style loading on relationships, so that a "nested" cursor can provide for the simplest eager loading implementation ever. The familiar syntax we use with joinedload() and subqueryload() gets the addition of nestedload(), which we drop in in the same way:

from sqlalchemy_akiban.orm import nestedload_all

result = session.query(Customer).options(
                    orm.nestedload_all(Customer.orders, Order.items)).\
                        filter( == 1)

Above, the Customer.orders and Order.items collections are populated directly from nested results, using a single statement that optimizes as fast as a straight select of just the customer table and nothing else:

SELECT AS customer_id, AS customer_name,
            (SELECT, item.order_id, item.price, item.quantity
            FROM item
            WHERE "order".id = item.order_id
        ) AS anon_2,
        "order".id, "order".customer_id, "order".order_info
        FROM "order"
        WHERE = "order".customer_id
) AS anon_1
FROM customer
WHERE = %(id_1)s

All of the above was possible with pretty much no changes to SQLAlchemy itself, save for one new dialect hook which allows the cursor context to be available to type objects - since we introduced an extension type called NestedResult which needs more information than most types. The ORM, compiler, etc. needed no changes. The result of this stage is available at SQLAlchemy Akiban.